PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G15820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 358aa    MW: 39702.5 Da    PI: 9.6124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G15820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68e-56211511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++k+++  +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  OGLUM09G15820.1  21 LPPGFRFHPTDEELITYYLRQKIADGGFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 113
                      79*************************999.89***************99999****************************************9 PP

              NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + elvg+kktLvfykgrap+gekt+Wvmheyrl
  OGLUM09G15820.1 114 GqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 151
                      766666677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6417172IPR003441NAC domain
PROSITE profilePS5100560.86321172IPR003441NAC domain
PfamPF023652.4E-2922151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAMGMEGSGG GGSAKKKEES LPPGFRFHPT DEELITYYLR QKIADGGFTA RAIAEVDLNK  60
CEPWDLPEKA KMGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IFTGQPPATP  120
ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKSIPKSN KDEWVVCRIF AKTAGVKKYP  180
SNNAHSRSHH PYTLDMVPPL LPALLQQDPF GRGHHPYMNP VDMAELSRFA RGTPGLHPHI  240
QPHPGYINPA TPFTLSGLNL NLGSSPAMPP PPPPPPQSIL QAMSMPMNQP STTNQVMVTE  300
QMIPGLANGV IPQGTDGGFT TDVVVGSTGI RYQNLDVEQL VERSWIVLRC EIVRGIGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-552017816171NAC domain-containing protein 19
4dul_A1e-552017816171NAC domain-containing protein 19
1ut7_B1e-552017816171NO APICAL MERISTEM PROTEIN
1ut7_A1e-552017816171NO APICAL MERISTEM PROTEIN
1ut4_B1e-552017816171NO APICAL MERISTEM PROTEIN
1ut4_A1e-552017816171NO APICAL MERISTEM PROTEIN
3swp_D1e-552017819174NAC domain-containing protein 19
3swp_C1e-552017819174NAC domain-containing protein 19
3swp_B1e-552017819174NAC domain-containing protein 19
3swp_A1e-552017819174NAC domain-containing protein 19
3swm_D1e-552017819174NAC domain-containing protein 19
3swm_C1e-552017819174NAC domain-containing protein 19
3swm_B1e-552017819174NAC domain-containing protein 19
3swm_A1e-552017819174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025110.0AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612624.10.0PREDICTED: NAC domain-containing protein 92
RefseqXP_015612625.10.0PREDICTED: NAC domain-containing protein 92
SwissprotQ9FLJ22e-83NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0B4U80.0A0A0E0B4U8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA029508-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-90NAC domain containing protein 38